IGVFFI5506XKFA

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5556IRJC(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP012_G7_P059_L005_R3

md5sum

fc3e188afa5e72aa4102740257e13acf

Content MD5sum

8174e9940a530f42951134188fe65709

File Size

1.5 GB

Submitted File Name

Multiome_ATAC_RP012_G7_L007_P059_S87_L005_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

49858133

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6267UURV

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples