IGVFFI5504QCOT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5060RPOC(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X023_G5_P021_L001_I1

md5sum

6e4cd1fd3bde29c6e1591e7106cd18c3

Content MD5sum

f633447fd70dbe075d5ed79a85eebdd5

File Size

1.4 GB

Submitted File Name

Multiome_ATAC_X023_G5_L005_P021_S11_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

190553079

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4549GBAI

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 88 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 75 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples