IGVFFI5498SRIV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5508ONPS(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP014_G4_P061_L001_R1

md5sum

1cf3c75b111df13bf2887cb581a8cf97

Content MD5sum

8fff86c0266c55d54565c8d6021fca32

File Size

2.1 GB

Submitted File Name

Multiome_ATAC_RP014_G4_L004_P061_S12_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

67100216

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8048XYHR

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 14 more samples