IGVFFI5489BYXR

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8662BJYJ(single-nucleus RNA sequencing assay (10x multiome))

Summary

I2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP010_G8_P060_L006_I2

md5sum

366faae0094ffc6885d13f3e09184fb2

Content MD5sum

8b7917ef72ec56c0fef97267ca57f072

File Size

454 MB

Submitted File Name

Multiome_RNA_RP010_G8_L008_P060_S43_L006_I2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

80143497

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6509YCTF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; ... and 12 more samples