IGVFFI5484ZXJH

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    "aliases": [
        "jesse-engreitz:auxiliary_files_CRUDO_TAPseq-Auxin6hrs-Rep1_S4_R1"
    ],
    "assay_titles": [
        "TAP-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011972/",
        "component": "functional characterization"
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    "content_md5sum": "7794f36c52832f4b03b91a4505635434",
    "content_type": "reads",
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    "creation_timestamp": "2024-06-03T19:16:04.768428+00:00",
    "file_format": "fastq",
    "file_set": {
        "@id": "/auxiliary-sets/IGVFDS5533XJRU/",
        "accession": "IGVFDS5533XJRU",
        "file_set_type": "gRNA sequencing",
        "samples": [
            {
                "@id": "/in-vitro-systems/IGVFSM9983LVUX/",
                "accession": "IGVFSM9983LVUX",
                "classifications": [
                    "cell line"
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                "sample_terms": [
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                        "@id": "/sample-terms/EFO_0002824/",
                        "term_name": "HCT116"
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                ],
                "summary": "HCT116 cell line, male, Homo sapiens treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with a guide library",
                "taxa": "Homo sapiens"
            }
        ],
        "summary": "gRNA sequencing for mixed TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci"
    },
    "file_size": 229317133,
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI5484ZXJH/@@download/IGVFFI5484ZXJH.fastq.gz",
    "illumina_read_type": "R1",
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    "lab": {
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        "title": "Jesse Engreitz, Stanford"
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    "loci_list_for": [],
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    "sequencing_platform": "/platform-terms/EFO_0008566/",
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    "submitted_by": {
        "@id": "/users/100f06c6-83a7-4b4d-9dfd-053a1829773b/",
        "title": "Benjamin Doughty"
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    "submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/221125_Cohesin_TAPseq_v1/221125_Cohesin_TAPseq_v1/outs/fastq_path/L363_S4_L004_R1_001.fastq.gz",
    "summary": "R1 reads from sequencing run 1",
    "upload_status": "validated",
    "uuid": "cc2c00e0-c308-43b8-9fa3-c37bdbf1251e"
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