IGVFFI5479OCTW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4938ZDAY(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP018_G6_P063_L007_R1

md5sum

17f3a09c2c711da9172d872e74f4dc13

Content MD5sum

085773e2b1b37c8716b594da155e6728

File Size

1.5 GB

Submitted File Name

Multiome_ATAC_RP018_G6_L006_P063_S34_L007_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

50208519

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4716JFLW

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples