IGVFFI5475DRCO

preview
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI5475DRCO/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI5475DRCO",
10    "aliases": [
11        "jimmie-ye:XX16-SC4_snRNA_S1_R1"
12    ],
13    "assay_titles": [
14        "10x multiome"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v17",
22    "content_md5sum": "fd072832a08c33d340e0041f85ee9e57",
23    "content_type": "reads",
24    "controlled_access": true,
25    "creation_timestamp": "2025-03-11T00:22:19.609667+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/measurement-sets/IGVFDS0002AETO/",
30        "@type": [
31            "MeasurementSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS0002AETO",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0003109/",
38            "term_name": "single-nucleus RNA sequencing assay"
39        },
40        "file_set_type": "experimental data",
41        "samples": [
42            {
43                "@id": "/multiplexed-samples/IGVFSM7234OUBC/",
44                "@type": [
45                    "MultiplexedSample",
46                    "Sample",
47                    "Item"
48                ],
49                "accession": "IGVFSM7234OUBC",
50                "classifications": [
51                    "primary cell",
52                    "multiplexed sample"
53                ],
54                "disease_terms": [],
55                "modifications": [],
56                "sample_terms": [
57                    {
58                        "@id": "/sample-terms/CL_2000001/",
59                        "status": "released",
60                        "term_name": "peripheral blood mononuclear cell"
61                    }
62                ],
63                "status": "preview",
64                "summary": "multiplexed sample: Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell; ... and 18 more samples",
65                "taxa": "Homo sapiens",
66                "treatments": []
67            }
68        ],
69        "status": "preview",
70        "summary": "single-nucleus RNA sequencing assay (10x multiome)"
71    },
72    "file_size": 8493280461,
73    "gene_list_for": [],
74    "href": "/sequence-files/IGVFFI5475DRCO/@@download/IGVFFI5475DRCO.fastq.gz",
75    "illumina_read_type": "R1",
76    "input_file_for": [],
77    "integrated_in": [],
78    "lab": {
79        "@id": "/labs/jimmie-ye/",
80        "title": "Jimmie Ye, UCSF"
81    },
82    "loci_list_for": [],
83    "maximum_read_length": 50,
84    "md5sum": "b603c7eb9fadbc6a8bb4ca22214e8177",
85    "mean_read_length": 50,
86    "minimum_read_length": 50,
87    "quality_metrics": [],
88    "read_count": 295215392,
89    "read_names": [
90        "Read 1"
91    ],
92    "s3_uri": "s3://igvf-restricted-files/2025/03/11/94cf3821-c3d5-434f-a4e0-648d7d2ce9f8/IGVFFI5475DRCO.fastq.gz",
93    "schema_version": "15",
94    "seqspecs": [
95        "/configuration-files/IGVFFI2490JCKH/"
96    ],
97    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
98    "sequencing_platform": {
99        "@id": "/platform-terms/EFO_0008637/",
100        "status": "released",
101        "term_name": "Illumina NovaSeq 6000"
102    },
103    "sequencing_run": 258,
104    "status": "preview",
105    "submitted_by": {
106        "@id": "/users/6df823a5-62f2-4562-94ba-e9285afcfcf4/",
107        "title": "Marcus Alvarez"
108    },
109    "submitted_file_name": "production_data/xhlt1/data/single_cell_GEX/raw/XHLT1-POOL-XX16-SC4/BH73JJDSX3_ICJY07/XHLT1-POOL-XX16-SC4-GEX_S11_L002_R1_001.fastq.gz",
110    "summary": "R1 reads from sequencing run 258",
111    "upload_status": "validated",
112    "uuid": "94cf3821-c3d5-434f-a4e0-648d7d2ce9f8"
113}