IGVFFI5467AWPS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1792VRZK(single-nucleus RNA sequencing assay (10x multiome))

Summary

I2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X034_G3_P034_L002_I2

md5sum

b81f15be61f134bde6531d74b70089d8

Content MD5sum

23e4b0ad59044603477cbd9d4837c2b2

File Size

1.6 GB

Submitted File Name

Multiome_RNA_X034_G3_L003_P034_S27_L002_I2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

247330789

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1324BFCG

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 80 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 10 more samples