IGVFFI5465QAHB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6327ZBLZ(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X031_G6_P031_L001_R3

md5sum

59f5163c576fa157c05e61f0b731d1f4

Content MD5sum

7da85a0de6abfa7dab876f7125e0413e

File Size

10 GB

Submitted File Name

Multiome_ATAC_X031_G6_L006_P031_S12_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

187356277

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2234VVAF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 80 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples