IGVFFI5446DAVF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3238TJDX(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP005_G7_P056_L008_I1

md5sum

71a268b15ec820f9712017d62b3148aa

Content MD5sum

448a3f3c84711f1517198f6e7829675f

File Size

413 MB

Submitted File Name

Multiome_RNA_RP005_G7_L007_P056_S78_L008_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JHVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

72530663

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3222RGNB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples