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IGVFFI5441SJAB

released
validated
File Set
IGVFDS7446XPVQ(scATAC-seq)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jay-shendure:scATAC_mEBs_rep2_day21_10XlaneA_R1
md5sum
03fa720bf2767bce78f1b8b5be63e3cd
Content MD5sum
c9fb27842859e4321374c0d2da678042
File Size
3.2 GB
Submitted File Name
/net/shendure/vol8/projects/JBL/GEO_scATAC_EB_correction_nobackup/scATAC_mEBs/scATAC_mEBs_d21_crispri_rep2_lane_a_R1_001.fastq.gz

Sequencing Details

Sequencing Platform
Illumina NextSeq 500
Sequencing Run
1
Flowcell ID
H3JK7BGXG
Lane
1
Sequencing Kit
NextSeq 500/550 High-Output v2.5 Kit
Illumina Read Type
R1
Average Read Length
50
Read Count
94896255

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneA), male, Mus musculus WD44

Files Derived From This File

7 items
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
87 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
202 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
53 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
71 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
126 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
120 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
77 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI8854LSLE, IGVFFI9392NJAO, IGVFFI5441SJAB, IGVFFI9532BEXG
Jay Shendure, UW
849 B
validated

Attribution

Award
HG011966
Principal Investigator(s)
Contact P.I.
Jay Shendure
Lab
Jay Shendure, UW