IGVFFI5418WPER

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5144SCSL(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP007_G1_P055_L004_R2

md5sum

d0192079343457200b84ce83092b3da6

Content MD5sum

8d49d3526dc8fb6f2e406da99296fd2a

File Size

1.3 GB

Submitted File Name

Multiome_ATAC_RP007_G1_L001_P055_S13_L004_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

74188492

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3050FUJW

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 81 years) cerebellar cortex tissue; ... and 10 more samples