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IGVFFI5414RVVY

released
validated
File Set
IGVFDS8701GVWQ(lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp12_multi_10x3_NGS2_r2
md5sum
e6f86829c61b7270e00dab0aa2f54914
Content MD5sum
c2cac19c650a7a39bf49b756d8803a42
File Size
521 MB
Submitted File Name
/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI3_S10_L002_R2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
225LWLLT3
Lane
2
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R2
Average Read Length
90
Read Count
11103930

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
cell hashing barcodes
cell hashing barcodes
Ansuman Satpathy, Stanford
107 KB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI1422XNHL, IGVFFI2997WSZH, IGVFFI0252DVSD, IGVFFI5414RVVY
Ansuman Satpathy, Stanford
1.3 KB
validated