IGVFFI5413PMUB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7688YQXY(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X037_G4_P037_L001_R3

md5sum

2e596fc69c07fe22f4c0d32edb850285

Content MD5sum

cb1c635180b1f82a69ec99b2a8368685

File Size

6.4 GB

Submitted File Name

Multiome_ATAC_X037_G4_L004_P037_S10_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VM5DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

202503545

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8498PZUG

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 81 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (male, 81 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples