IGVFFI5407QDFC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3353NTQR(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X017_G2_P015_L003_R2

md5sum

aa77a3371495d292ee99b1569ff78371

Content MD5sum

35483f345262ba506a641f566ec632ea

File Size

4.8 GB

Submitted File Name

Multiome_ATAC_X017_G2_L002_P015_S24_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

278127591

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0604ZSIQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples