{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI5399NAFE/",
"@type": [
"SequenceFile",
"File",
"Item"
],
"accession": "IGVFFI5399NAFE",
"aliases": [
"jay-shendure:sc_rep_devCRE_mEBs_oBC_CS1_rep2B_10Xlane1_I1"
],
"assay_titles": [
"MPRA (scQer)"
],
"audit": {},
"award": {
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"component": "functional characterization"
},
"content_md5sum": "763341aa5308a46e45077d58b1434ab6",
"content_type": "reads",
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"creation_timestamp": "2023-12-09T00:58:43.219526+00:00",
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"file_format": "fastq",
"file_set": {
"@id": "/auxiliary-sets/IGVFDS6059ISIJ/",
"accession": "IGVFDS6059ISIJ",
"file_set_type": "circularized RNA barcode detection",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM0317RLIP/",
"accession": "IGVFSM0317RLIP",
"classifications": [
"differentiated cell specimen"
],
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{
"@id": "/sample-terms/EFO_0004038/",
"status": "released",
"term_name": "mouse embryonic stem cell"
}
],
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"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane1), male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
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"status": "released",
"term_name": "embryoid body"
},
"taxa": "Mus musculus"
}
],
"status": "released",
"summary": "circularized RNA barcode detection for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci"
},
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"flowcell_id": "H3JVCBGXM",
"gene_list_for": [],
"href": "/sequence-files/IGVFFI5399NAFE/@@download/IGVFFI5399NAFE.fastq.gz",
"illumina_read_type": "I1",
"input_file_for": [
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"/tabular-files/IGVFFI0929WRXO/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/jay-shendure/",
"title": "Jay Shendure, UW"
},
"lane": 1,
"loci_list_for": [],
"maximum_read_length": 8,
"md5sum": "1e8d9d9fa4754fb0b7c935548adb4cfd",
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"read_count": 57228007,
"release_timestamp": "2024-06-27T00:41:45.783545+00:00",
"s3_uri": "s3://igvf-files/2023/12/09/5aac68a8-7632-41a7-8216-0d5eaeb29caf/IGVFFI5399NAFE.fastq.gz",
"schema_version": "14",
"seqspecs": [
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],
"sequencing_kit": "NextSeq 500/550 High-Output v2.5 Kit",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"sequencing_run": 1,
"status": "released",
"submitted_by": {
"@id": "/users/73f58e9f-8f5d-4fee-a7cd-dd63c0167e4b/",
"title": "Beth Martin"
},
"submitted_file_name": "/net/shendure/vol8/projects/JBL/GEO_sc_rep_fastqs_nobackup/geo_submission_20221108/sc_rep_devCRE_mEBs/sc_rep_mEB_series_oBC_CS1_rep2B_lane1_I1_001.fastq.gz",
"summary": "I1 reads from sequencing run 1",
"upload_status": "validated",
"uuid": "5aac68a8-7632-41a7-8216-0d5eaeb29caf"
}