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INDEXED
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SequenceFile
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IGVFFI5399IWYY
IGVFFI5399IWYY
preview
validated
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS5090MUJO
(single-nucleus ATAC-seq (10x multiome))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_ATAC_RP025_G3_P069_L002_R1
md5sum
547e83021a83d2f6be05439b591c8e4d
Content MD5sum
69cf649b10a7e250ee85391e12f2a1e3
File Size
13 GB
Submitted File Name
Multiome_ATAC_RP025_G3_L003_P069_S3_L002_R1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
19RTCA4LE
Lane
2
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
150
Read Count
194573378
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM4296CDRL
MultiplexedSample
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 8 more samples