IGVFFI5398GWBE

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3450MBZM(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X030_G5_P029_L003_R1

md5sum

e7d23b60ea9cf5295fd327876fe20426

Content MD5sum

c5b09df3249633b065f813138b6eeda4

File Size

12 GB

Submitted File Name

Multiome_ATAC_X030_G5_L005_P029_S33_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

227006670

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0177WEBY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 60 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples