IGVFFI5390XAYJ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4044NLZW(single-nucleus RNA sequencing assay (10x multiome))

Summary

I2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X031_G8_P032_L004_I2

md5sum

48c690e9855117df1fb71dbe57a5a9f2

Content MD5sum

6faf9c74f7f300ce1e8c6f9fc7905c65

File Size

1.7 GB

Submitted File Name

Multiome_RNA_X031_G8_L008_P032_S50_L004_I2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

261930901

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0804HOWT

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 80 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples