IGVFFI5386XIKZ

released

validated

File Set

IGVFDS5581ABLR(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin0hrs-FF1-BinE-PCR4_Rep1_S23

md5sum

e7e7569cb4b815dadfe053943c9cb4a2

Content MD5sum

8dc4673d6110473ca9b13a2cc3fb502a

File Size

49 MB

Submitted File Name

/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin0hrs-FF1-BinE-PCR4-Rep1_S23_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina HiSeq 2500

Sequencing Run

Index

CCTACCAT:TGCG

Average Read Length

Read Count

2556912

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM7084WNRY

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin E for 80-90% expression of MYC) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library