IGVFFI5379EYZR

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9990VRCJ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X027_G5_P027_L003_R1

md5sum

b3a2a0e07178fde84b790ebd477a9797

Content MD5sum

231a2e7ae0df24189537a30acb164bab

File Size

5.6 GB

Submitted File Name

Multiome_ATAC_X027_G5_L005_P027_S14_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

174390942

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8693AIJI

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 71 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples