IGVFFI5370XWVO

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7395RITD(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X056_G4_P073_L002_R3

md5sum

80b66592b9270e372c2f1990de7ed435

Content MD5sum

464cc816b3e09a60664e9fa389523a71

File Size

12 GB

Submitted File Name

Multiome_ATAC_X056_G4_L004_P073_S12_L002_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

171174272

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4067NDEZ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 8 more samples