IGVFFI5369RXNG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1083PVRL(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X033_G4_P033_L001_I1

md5sum

5872f0845836416b9966e905442ee1d5

Content MD5sum

8b413a5cc8745358e321cf2603fb8750

File Size

1.3 GB

Submitted File Name

Multiome_ATAC_X033_G4_L004_P033_S6_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

176082911

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7822WDMB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue; ... and 10 more samples