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IGVFFI5368RJHA

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS5514EBWS(gRNA sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
gary-hon:LW274B_1_R2
md5sum
da4fdf7cf0700aa8380f33c339ec6546
Content MD5sum
b687ce7a7a7c1f231f90ec8a2ab33139
File Size
1.0 GB
Submitted File Name
/project/GCRB/Hon_lab/shared/data/sequencing_data/2023/2023-09-11-McDermott-NextSeq.10X/2023-09-11/outs/fastq_path/AACYY52M5//LW274B_S14_L001_R2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles

Sequencing Details

Sequencing Platform
Illumina NextSeq 2000
Sequencing Run
1
Flowcell ID
AACYY52M5
Lane
1
Illumina Read Type
R2
Average Read Length
92
Read Count
30006522

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW274), female, Homo sapiens modified with CRISPRi Sp-dCas9, transfected with a guide library

Files Derived From This File

2 items
hdf5
filtered feature barcode matrix
cell by UMI count in filtered feature barcode matrix
Gary Hon, UT
425 MB
validated
pkl
raw feature barcode matrix
cell by CRISPR guide capture in raw feature barcode matrix
Gary Hon, UT
789 MB
validated

Attribution

Award
HG011996
Principal Investigator(s)
Contact P.I.
Gary Hon
Lab
Gary Hon, UT