IGVFFI5361OTXN

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3530SKJW(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X017_G5_P016_L004_R1

md5sum

3c5c18f98c009816a50b0b87473d5b50

Content MD5sum

f7aabf64c17d0d0a770bd2a7ef80b1a1

File Size

4.3 GB

Submitted File Name

Multiome_RNA_X017_G5_L005_P016_S13_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

209513676

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4314JKFX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples