IGVFFI5359LIHC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5773AVMD(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X046_G5_P047_L003_R2

md5sum

b4a8c435a58d33e0ddc2121ee49265eb

Content MD5sum

43b92d184e16caef371e46ebaa4bb927

File Size

5.5 GB

Submitted File Name

Multiome_ATAC_X046_G5_L005_P047_S17_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

321880456

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2300MKEN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 78 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 53 years) middle temporal gyrus tissue; ... and 10 more samples