IGVFFI5358TEYV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9599ZHWG(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP014_G1_P061_L003_R3

md5sum

117db1b99ebdb28d3f25a790c7a8a0db

Content MD5sum

a40735099c4189ec30b4d4f89e00da36

File Size

241 MB

Submitted File Name

Multiome_ATAC_RP014_G1_L001_P061_S9_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

7472059

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3192MEUT

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 14 more samples