IGVFFI5356CMPF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6904QKJC(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X056_G8_P073_L003_R2

md5sum

9422dade44404857afa97f7e8d175d09

Content MD5sum

e672c44c79ce67a4a2626e35386b3236

File Size

3.2 GB

Submitted File Name

Multiome_ATAC_X056_G8_L008_P073_S16_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

187613270

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3458KTYQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 8 more samples