IGVFFI5353RTDK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4084LQYP(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X038_G7_P039_L003_R3

md5sum

92b9c11ea08e671f0478c04897842f78

Content MD5sum

b7d209a32c03f15fc5b72883855abd6a

File Size

7.5 GB

Submitted File Name

Multiome_ATAC_X038_G7_L007_P039_S21_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VM5DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

233223196

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6450TAPI

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 84 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples