IGVFFI5335BHYW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6220HECG(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X005_G6_P003_L004_R1

md5sum

69d33e23653498b11f2290e75015e4b7

Content MD5sum

20b6d70bf8ebae3b1ffc2980472baef4

File Size

5.1 GB

Submitted File Name

Multiome_ATAC_X005_G6_L006_P003_S24_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5TH7DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

160563801

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6427JBTA

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 87 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with cerebral amyloid angiopathy; ... and 10 more samples