IGVFFI5318JWYA

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6751EKJB(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP001_G8_P051_L006_I1

md5sum

b3bc38227d1e5787f35285df74db32ac

Content MD5sum

7280bd48d9d6d1f017cbae0725daf6fb

File Size

631 MB

Submitted File Name

Multiome_ATAC_RP001_G8_L008_P051_S28_L006_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

93080122

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4595ROAA

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 10 more samples