IGVFFI5316GPGS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8899IQNI(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X016_G4_P016_L004_I1

md5sum

07dd737a3e374657e72f9092cbdbbea9

Content MD5sum

e1133badc9da484a14fd21798635c4b6

File Size

1.3 GB

Submitted File Name

Multiome_RNA_X016_G4_L012_P016_S4_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

235896416

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1455JWDF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 88 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples