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IGVFFI5314QYSA

released
validated
File Set
IGVFDS1253DLDL(lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder)
Summary
R3 reads from sequencing run 1
File Format
fastq
Content Type
reads
md5sum
d7c32f0477bfd842ef8dfd903a60c005
Content MD5sum
f4f7d747767580c7506937cfcc99a0e6
File Size
662 MB
Submitted File Name
"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/ASD_nadav/counts/TSTFI73286506RNA_rep1_R3.fastq.gz"

Sequencing Details

Sequencing Platform
Illumina NextSeq 500
Sequencing Run
1
Sequencing Kit
NextSeq 500 Mid Output v2 Kit
Illumina Read Type
R3
Average Read Length
15
Read Count
30515047

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
neural progenitor pooled cell specimen, Homo sapiens transfected with a reporter library

Files Derived From This File

3 items
tsv
reporter experiment
reporter experiment
Nadav Ahituv, UCSF
553 KB
validated
tsv
reporter genomic variant effects
reporter genomic variant effects
Nadav Ahituv, UCSF
121 KB
validated
tsv
reporter experiment
reporter experiment
Nadav Ahituv, UCSF
543 KB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI2104GOOJ, IGVFFI1100CEBW, IGVFFI5314QYSA
Nadav Ahituv, UCSF
1.3 KB
validated

Attribution

Award
HG011966
Principal Investigator(s)
Contact P.I.
Jay Shendure
Lab
Nadav Ahituv, UCSF