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IGVFFI5304CPDI

released
validated
File Set
IGVFDS3169TEEK(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp1_atac_10x2_NGS1_r1
md5sum
288320dca1f2d0cbd728ab7a4f65eed1
Content MD5sum
ad47a24bf2291fdfe4fa6ba066c2fe20
File Size
11 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF1_McGinnis/ATAC/FASTQ/ATAC_2_S359_L007_R1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
2257H3LT3
Lane
7
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
50
Read Count
379252159

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) HAP-1 cell line; Homo sapiens (male) HAP-1 cell line; ... and 13 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fragments
fragments
Ansuman Satpathy, Stanford
4.0 GB
validation exempted

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI0737RLFI, IGVFFI5304CPDI, IGVFFI0660RPDV, IGVFFI4807KWFS
Ansuman Satpathy, Stanford
1.4 KB
validated