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IGVFFI5288RAVF

released
validated
File Set
IGVFDS4595RDQM(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp16_rna_10x4_NGS1_r2
md5sum
56f9fbbbb2850aa91825bca9f651e6b8
Content MD5sum
84bbc52e43e41096298001f20fd7c589
File Size
11 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/igvf16/GEX/CMAS18_GEX4_S10_L003_R2_001.fastq.gz
Checkfiles Version
v14
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
22NCFCLT3
Lane
3
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R2
Average Read Length
90
Read Count
275991918

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 11 days; Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days; ... and 6 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
224 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI5118KMPK, IGVFFI5288RAVF, IGVFFI8983TGLX, IGVFFI4992DGVZ
Ansuman Satpathy, Stanford
1.4 KB
validated