IGVFFI5287IDAF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8885GAJV(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP007_G5_P055_L003_I1

md5sum

c0817d0e175e6df57d49011cfc9ce4f0

Content MD5sum

638dbb6f6e17245a1b49f75e24310da1

File Size

470 MB

Submitted File Name

Multiome_ATAC_RP007_G5_L005_P055_S17_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

69180605

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2276WIKG

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 81 years) cerebellar cortex tissue; ... and 10 more samples