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SequenceFile
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IGVFFI5282JAXN
IGVFFI5282JAXN
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS6808IEZS
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_RP033_G7_P080_L008_R1
md5sum
5efe52cd4cb957dc72055c0ceb3cf8d3
Content MD5sum
3d63d0bc6346521986cfcf31e98af422
File Size
13 GB
Submitted File Name
Multiome_RNA_RP033_G7_L007_P080_S59_L008_R1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
19NHCA4LE
Lane
8
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
151
Read Count
146743600
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM4328GBGB
MultiplexedSample
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) substantia nigra tissue associated with Parkinson's disease; ... and 6 more samples