IGVFFI5267QFNY

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5963QMGC(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X027_G4_P026_L002_R1

md5sum

5dce2ada08526f8c35e1e8d2f57061dd

Content MD5sum

e7d5076e3d1d4c805e7fb69af68a3469

File Size

4.7 GB

Submitted File Name

Multiome_RNA_X027_G4_L004_P026_S13_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

224868907

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7900CVVQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 71 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples