IGVFFI5265LSLV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2582UBJN(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X037_G7_P037_L001_R3

md5sum

d2495caf39c3c1c87bc56cb7487db5a1

Content MD5sum

3914f06e93002e5d29883f4861a593ab

File Size

6.0 GB

Submitted File Name

Multiome_ATAC_X037_G7_L007_P037_S13_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VM5DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

186171668

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2874KTFO

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 81 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (male, 81 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples