Home

IGVFFI5260WOIC

released
validated
File Set
IGVFDS5786SCIX(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp11_rna_10x2_NGS2_r1
md5sum
a4ae5c696065eaf66215cf6ea9a9cb47
Content MD5sum
0a2214225d6685d350b0821c0ef3dfcf
File Size
36 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/240424_IGVF11_McGinnis/GEX/FASTQ/GEX_2_S23_L004_R1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
HGVFMDSX7
Lane
4
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
101
Read Count
543759867

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: H7-hESC differentiated cell specimen, female, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens; ... and 10 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
214 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI5260WOIC, IGVFFI5800DHVI, IGVFFI9342HTEM, IGVFFI8840MDYG
Ansuman Satpathy, Stanford
1.4 KB
validated

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford