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INDEXED
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SequenceFile
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IGVFFI5251VWZI
IGVFFI5251VWZI
released
validated
Json view
File Set
IGVFDS1219HABJ
(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp12_rna_10x2_NGS6_i1
md5sum
f91481219bf5e61e66b4d73a4fbe4d61
Content MD5sum
5ca67c43e6d2d768f9fc08f4441ff6c7
File Size
1.2 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/GEX/FASTQ/GEX2_S2_L006_I1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
225LWLLT3
Lane
6
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I1
Average Read Length
10
Read Count
218880175
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM5189FTFS
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI6258ELSL
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
205 MB
validated
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI8399LVCV
yaml
seqspec
seqspec of IGVFFI7968KZUN, IGVFFI2801DXEI, IGVFFI5251VWZI, IGVFFI7514WLNZ
Ansuman Satpathy, Stanford
1.4 KB
validated
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford