{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI5250EMTO/",
"@type": [
"SequenceFile",
"File",
"Item"
],
"accession": "IGVFFI5250EMTO",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep3-BinF-PCRrep2_R1"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released sequence file [IGVFFI5250EMTO](/sequence-files/IGVFFI5250EMTO/) has in progress subobject auxiliary set [IGVFDS9586MJQR](/auxiliary-sets/IGVFDS9586MJQR/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/sequence-files/IGVFFI5250EMTO/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization"
},
"content_md5sum": "4088119d15ea3f45645b0eb613efdd08",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T18:37:54.743414+00:00",
"file_format": "fastq",
"file_set": "/auxiliary-sets/IGVFDS9586MJQR/",
"file_size": 7513478,
"gene_list_for": [],
"href": "/sequence-files/IGVFFI5250EMTO/@@download/IGVFFI5250EMTO.fastq.gz",
"illumina_read_type": "R1",
"index": "CCAACATT:TGAC",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"loci_list_for": [],
"maximum_read_length": 150,
"md5sum": "2477e8d9578ffe8986887b063429982c",
"mean_read_length": 150,
"minimum_read_length": 150,
"read_count": 336583,
"release_timestamp": "2023-12-21T00:12:25.108546+00:00",
"s3_uri": "s3://igvf-files/2023/12/05/4afc4e9c-7f3a-4bb9-88f7-8efd605a8faa/IGVFFI5250EMTO.fastq.gz",
"schema_version": "14",
"seqspecs": [],
"sequencing_platform": "/platform-terms/EFO_0008566/",
"sequencing_run": 2,
"status": "released",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_file_name": "220426pPPIF_REPEAT-THP1-Gen8b-pPPIF-Amp_pPPIF-BioRep1-FFRep3-BinF-PCRrep2_S116_R1_001.fastq.gz",
"summary": "R1 reads from sequencing run 2",
"upload_status": "validated",
"uuid": "4afc4e9c-7f3a-4bb9-88f7-8efd605a8faa"
}