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IGVFFI5244UXCI

released
validated
File Set
IGVFDS9620KXMW(single-cell RNA sequencing assay (SHARE-seq))
Summary
R1 reads from sequencing run 269
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2115_R1
bradley-bernstein:SS-LS_269_R1
buenrostro-bernstein:SS-LS_2115_R1
buenrostro-bernstein:SS-LS_269_R1
md5sum
32cd0e55e1584647f86f642dcf7c1f25
Content MD5sum
e036618ed9f3790151c29ce4dd09a99a
File Size
1.1 GB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-197_L2_SS-PKR-132_SS-V1-RIGHT-HALF_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
269
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
39300278

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 132)

Files Derived From This File

2 items
tar
comprehensive gene count matrix
unfiltered cell by gene in comprehensive gene count matrix
Jason Buenrostro, Broad
5.2 GB
validated
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
962 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI5244UXCI, IGVFFI4287WIUQ
Jason Buenrostro, Broad
1.2 KB
validated