IGVFFI5243KTWV

released

validated

File Set

IGVFDS2805FQAD(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR2_Rep2_S62

md5sum

13b278924c9dc408d24f171a8d417971

Content MD5sum

6fd3acb27c4bde337fc9a3cddf3e71cb

File Size

15 MB

Submitted File Name

/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin0hrs-FF1-BinA-PCR2-Rep2_S62_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina HiSeq 2500

Sequencing Run

Index

CCAGTTAG:TCTC

Average Read Length

Read Count

773615

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM3086DQMC

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin A for 0-10% expression of MYC) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library