IGVFFI5242XWDT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6713WNIZ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP008_G3_P057_L002_R1

md5sum

0c055a59a24e6338bd91f2972eb834ab

Content MD5sum

a1acce0cbcba0b7331d531e5ab0a4b79

File Size

1.1 GB

Submitted File Name

Multiome_ATAC_RP008_G3_L003_P057_S3_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

34555377

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3559TDPL

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 79 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples