IGVFFI5241IICV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8899IUPN(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X040_G5_P041_L004_I1

md5sum

b4505e40cc066d4a1c8d7477d60c2f9a

Content MD5sum

53679c45d71b775694315bf86bb8df38

File Size

525 MB

Submitted File Name

Multiome_ATAC_X040_G5_L005_P041_S7_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

72032851

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6104DPZN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples