IGVFFI5238VRCJ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4171WSHF(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X007_G5_P005_L001_R3

md5sum

5f848e3ddaacf0be62b3d4d446bbbab8

Content MD5sum

9c347cb9e1d7778e06e51f5822e768f2

File Size

23 GB

Submitted File Name

Multiome_ATAC_X007_G5_L005_P005_S5_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5THNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

445233893

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2665DLGD

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 81 years) putamen tissue; Homo sapiens (male, 90 or above years) cerebellar cortex tissue; ... and 10 more samples