IGVFFI5232TEZC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2087DWUN(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP010_G5_P059_L007_I1

md5sum

09967ace6ecbda011be0b12e40d8742e

Content MD5sum

3fe875136bfbd9af8de31ac82534aeda

File Size

461 MB

Submitted File Name

Multiome_ATAC_RP010_G5_L005_P059_S69_L007_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

65867948

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8749HWYK

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; ... and 12 more samples