IGVFFI5231ATBS

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI5231ATBS/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI5231ATBS",
10    "assay_titles": [],
11    "audit": {},
12    "award": {
13        "@id": "/awards/HG011966/",
14        "component": "functional characterization"
15    },
16    "content_md5sum": "7221e9e6005dd86e3e826b485422ded5",
17    "content_type": "reads",
18    "controlled_access": false,
19    "creation_timestamp": "2024-10-14T14:08:51.025444+00:00",
20    "description": "Forward reads of oligos",
21    "externally_hosted": false,
22    "file_format": "fastq",
23    "file_set": {
24        "@id": "/construct-library-sets/IGVFDS1589ODOW/",
25        "@type": [
26            "ConstructLibrarySet",
27            "FileSet",
28            "Item"
29        ],
30        "accession": "IGVFDS1589ODOW",
31        "file_set_type": "reporter library",
32        "status": "released",
33        "summary": "reporter library targeting candidate cis-regulatory elements genome-wide"
34    },
35    "file_size": 9720715570,
36    "gene_list_for": [],
37    "href": "/sequence-files/IGVFFI5231ATBS/@@download/IGVFFI5231ATBS.fastq.gz",
38    "illumina_read_type": "R1",
39    "input_file_for": [
40        "/tabular-files/IGVFFI6803EINC/",
41        "/tabular-files/IGVFFI9041MJNS/"
42    ],
43    "integrated_in": [],
44    "lab": {
45        "@id": "/labs/nadav-ahituv/",
46        "title": "Nadav Ahituv, UCSF"
47    },
48    "loci_list_for": [],
49    "maximum_read_length": 146,
50    "md5sum": "b1913d3806ebf2fb4ae230003e40e6ea",
51    "mean_read_length": 146,
52    "minimum_read_length": 146,
53    "quality_metrics": [],
54    "read_count": 102187076,
55    "release_timestamp": "2025-01-30T17:46:55.057196+00:00",
56    "s3_uri": "s3://igvf-files/2024/10/14/13321c57-dba4-4fa6-a6ad-142795bd8170/IGVFFI5231ATBS.fastq.gz",
57    "schema_version": "15",
58    "seqspecs": [
59        "/configuration-files/IGVFFI7954ERXG/"
60    ],
61    "sequencing_kit": "NextSeq 500 Mid Output v2 Kit",
62    "sequencing_platform": {
63        "@id": "/platform-terms/EFO_0009173/",
64        "status": "released",
65        "term_name": "Illumina NextSeq 500"
66    },
67    "sequencing_run": 2,
68    "status": "released",
69    "submitted_by": {
70        "@id": "/users/3ad3479d-753b-4293-9c09-c0dcabfd0ddb/",
71        "title": "Max Schubach"
72    },
73    "submitted_file_name": "\"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/proximalPromotor/association/run2/Max_ass_S1_R1_001.fastq.gz\"",
74    "submitter_comment": "seqrun2",
75    "summary": "R1 reads from sequencing run 2",
76    "upload_status": "validated",
77    "uuid": "13321c57-dba4-4fa6-a6ad-142795bd8170"
78}