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IGVFFI5223DJAP

released
validated
File Set
IGVFDS9581AWPV(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp4_rna_10x1_NGS4_r2
md5sum
b49306df28f858c1f7288f287aa19ed7
Content MD5sum
1da023760d3e18b3b327ef9027be7bed
File Size
22 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF4_McGinnis/GEX/FASTQ/GEX_1-_S9_L003_R2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JJCLT3
Lane
3
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R2
Average Read Length
90
Read Count
533966373

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) cell line treated with 50 ng/mL interleukin 4 for 1 day; Homo sapiens (male) GM25256 (WTC-11) cell line treated with 100 ng/mL macrophage colony-stimulating factor 1 for 7 days; ... and 13 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
225 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI6051VOCC, IGVFFI0040UVZQ, IGVFFI5223DJAP, IGVFFI2223KAYS
Ansuman Satpathy, Stanford
1.4 KB
validated